Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RCIX420Predicted signal transduction histidine kinase,fragment 2. (350 aa)    
Predicted Functional Partners:
RRC407
Putative signal transduction protein.
 
     0.750
RCIX981
Putative signal transduction protein.
 
   
 0.749
RCIX418
Predicted signal transduction histidine kinase,fragment 1.
       0.605
trmL
N2-methylguanosine tRNA methyltransferase.
       0.533
RCIX422
Conserved hypothetical protein; Belongs to the UPF0237 family.
       0.526
RCIX424
Conserved hypothetical protein; Belongs to the UPF0210 family.
       0.526
RCIX1231
Putative signal transduction protein.
 
   
 0.522
RCIX417
Conserved hypothetical protein.
       0.400
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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