Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX439Hypothetical protein. (569 aa)    
Predicted Functional Partners:
RCIX440
Putative transporter (RND superfamily).
 
  
 0.945
RCIX1844
Conserved hypothetical protein.
  
     0.682
RCIX414
Hypothetical protein; Similar to RCIX409 and RCIX412.
  
     0.678
RCIX1209
Hypothetical protein.
  
     0.676
RCIX412
Hypothetical protein; Similar to RCIX409 and RCIX414.
  
     0.656
RCIX2680
Conserved hypothetical protein.
  
     0.651
RRC185
Hypothetical protein.
  
    0.650
RCIX2504
Hypothetical protein.
  
     0.634
LRC190
Hypothetical protein.
  
     0.622
LRC452
Hypothetical protein.
  
     0.604
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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