Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX443Putative response regulator (CheY-like). (132 aa)    
Predicted Functional Partners:
RCIX512
Putative signal transduction histidine kinase.
 
 0.955
RCIX1082
Putative signal transduction histidine kinase.
 
 
 0.915
RCIX1277
Predicted signal transduction histidine kinase.
 
 
 0.915
RCIX1081
Predicted signal transduction histidine kinase.
 
 
 0.913
RCIX170
Predicted signal transduction histidine kinase.
 
 
 0.900
rpoD
DNA-directed RNA polymerase, subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.861
RRC193
Putative signal transduction histidine kinase.
 
 
 0.861
RCIX2211
Putative signal transduction histidine kinase.
 
 
 0.839
rpoK
DNA-directed RNA polymerase, subunit K; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family.
  
 
 0.828
LRC113
Predicted signal transduction histidine kinase.
 
 
 0.803
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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