Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX449Conserved hypothetical protein. (181 aa)    
Predicted Functional Partners:
ssuC
Putative ABC-type sulfonate import system,permease component.
 
     0.783
ssuB
Putative ABC-type sulfonate import system, ATPase component.
 
     0.779
RCIX1141
Conserved hypothetical protein.
 
     0.680
mtxX
Putative methyltransferase mtx subunit X.
  
   
 0.668
RCIX452
Conserved hypothetical protein.
  
     0.658
LRC169
Conserved hypothetical protein.
  
     0.651
LRC174
Conserved hypothetical protein.
  
     0.627
mcrB
Methyl-coenzyme M reductase, beta subunit.
 
     0.626
RCIX2003
Conserved hypothetical nitrogenase-related protein.
  
     0.618
LRC168
Conserved hypothetical protein.
  
     0.615
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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