STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX451Predicted metalloprotease (M50 family); Belongs to the peptidase M50B family. (366 aa)    
Predicted Functional Partners:
RCIX450
Putative pheromone shutdown protein (TraB family).
       0.793
RCIX452
Conserved hypothetical protein.
 
     0.665
lpd
Dihydrolipoamide dehydrogenase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
  
 
 0.662
pdhD
Pyruvate dehydrogenase complex E3,dihydrolipoamide dehydrogenase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
  
 
 0.662
RCIX2738
Putative metallo-beta-lactamase.
 
 
 
 0.659
RRC436
Predicted rhodanese-like protein (thiosulfate sulfurtransferase family).
 
 
 
 0.633
RRC435
Predicted rhodanese-like protein (thiosulfate sulfurtransferase family).
 
 
 
 0.631
RCIX140
Predicted rhodanese-like protein (thiosulfate sulfurtransferase family).
   
 
 0.577
RRC119
Predicted rhodanese-like protein.
   
 
 0.577
cheC
Chemotaxis MCP methylation-inhibitor.
    
 
 0.568
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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