Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX452Conserved hypothetical protein. (99 aa)    
Predicted Functional Partners:
LRC236
Conserved hypothetical protein.
  
  
 0.791
RCIX455
Conserved hypothetical protein.
       0.786
RCIX1172
Conserved hypothetical protein.
  
     0.730
RCIX1141
Conserved hypothetical protein.
  
     0.727
RCIX1020
Conserved hypothetical protein.
  
     0.709
gsp-7a
Putative bacterial type II secretion system protein, N-terminal fragment.
  
    0.701
RCIX451
Predicted metalloprotease (M50 family); Belongs to the peptidase M50B family.
 
     0.698
RCIX1118
Putative signal sequence peptidase; Similar to orf41 of fosmid clone 1B6mr2.
  
     0.687
RCIX1120
Putative signal sequence peptidase; Similar to orf41 of fosmid clone 1B6mr2.
  
     0.685
RCIX752
Signal sequence peptidase.
  
     0.685
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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