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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX470Hypothetical protein. (354 aa)    
Predicted Functional Partners:
RCIX471
Hypothetical protein; Similarities to predicted regulator of Ras-like GTPase activity, member of the Roadblock/LC7/MglB family.
       0.862
RCIX469
Hypothetical protein.
       0.845
RCIX475
Conserved hypothetical protein.
       0.752
RCIX472
Conserved hypothetical protein; Putative regulator of Ras-like GTPase activity,member of the Roadblock/LC7/MglB family.
       0.745
mvhA-1
Coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing hydrogenase), alpha subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
       0.730
mvhG-1
Coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing hydrogenase), gamma subunit.
       0.730
RCIX468
Putative chromosome partitioning ATPase (MinD family).
       0.727
RCIX467
Hypothetical protein.
       0.601
fdx3-2
2(4Fe-4S) ferredoxin.
       0.574
RCIX1255
Putative ATPase involved in chromosome partitioning.
       0.414
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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