Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX481Putative hydrogenase membrane component (EchB-like). (313 aa)    
Predicted Functional Partners:
echA
Ech hydrogenase, subunit A.
 
 
 0.997
echD
Ech hydrogenase, subunit D.
 
 0.997
RCIX482
Putative hydrogenase 2(4Fe-4S) ferredoxin component (EchF-like).
 
 0.997
echF
Ech hydrogenase, subunit F.
 
 0.994
RCIX557
Predicted oxidoreductase integral membrane component (CooM/NuoL-like).
 
 
 0.987
RCIX479
[NiFe]-hydrogenase, large subunit (EchE-like).
 
   
 0.955
RCIX483
[NiFe]-hydrogenase, small subunit (EchC-like).
 
   
 0.951
echE
Ech hydrogenase, subunit E.
 
   
 0.809
rpl10e-2
50S ribosomal protein L10E; Belongs to the universal ribosomal protein uL16 family.
  
 
 0.792
echC
Ech hydrogenase, subunit C.
 
   
 0.789
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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