STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
porD-1Pyruvate:ferredoxin oxidoreductase, delta subunit. (95 aa)    
Predicted Functional Partners:
porA-1
Pyruvate:ferredoxin oxidoreductase, alpha subunit.
 
 0.999
porB-1
Pyruvate:ferredoxin oxidoreductase, beta subunit.
 
 0.999
porC-1
Pyruvate:ferredoxin oxidoreductase, gamma subunit.
 
 
 0.997
porB-2
Pyruvate:ferredoxin oxidoreductase, beta subunit.
 
 0.997
porA-2
Pyruvate:ferredoxin oxidoreductase, alpha subunit.
 
 0.997
porC-2
Pyruvate:ferredoxin oxidoreductase, gamma subunit.
 
 
 0.988
cdhE
Carbon monoxide dehydrogenase/acetyl-CoA synthase complex, corrinoid large subunit; Part of a complex that catalyzes the reversible cleavage of acetyl-CoA, allowing autotrophic growth from CO(2).
  
 
  0.925
acs-1
acetyl-CoA synthetase (AMP-forming).
   
 
 0.923
acs-2
Putative acetyl-CoA synthetase (AMP-forming).
   
 
 0.923
ppsA-2
Phosphoenolpyruvate synthetase (PEP synthase); Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.
    
 0.921
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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