Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
ndhPutative NADH dehydrogenase. (453 aa)    
Predicted Functional Partners:
RCIX2197
Sulfite reductase, assimilatory.
   
 0.925
RCIX2692
Sulfite reductase, assimilatory.
   
 0.923
RCIX76
Rieske Fe-S protein (FAD-dependent oxidoreductase family).
  
 
 0.895
fdhA-4
Formate dehydrogenase, alpha subunit.
    
 0.884
fdhA-3
Formate dehydrogenase, alpha subunit.
    
 0.875
fdhA-1
Formate dehydrogenase, alpha subunit.
    
 0.838
fdhA-2
Formate dehydrogenase, alpha subunit.
    
 0.813
RCIX502
Conserved hypothetical protein.
       0.791
fdx2-2
2Fe-2S Rieske-type ferredoxin.
 
 
 0.774
fdx2-1
2Fe-2S Rieske-type ferredoxin.
 
 
 0.768
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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