STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ndhPutative NADH dehydrogenase. (453 aa)    
Predicted Functional Partners:
RCIX76
Rieske Fe-S protein (FAD-dependent oxidoreductase family).
  
 
 0.970
RCIX2197
Sulfite reductase, assimilatory.
   
 0.932
RCIX2692
Sulfite reductase, assimilatory.
   
 0.930
fdx2-2
2Fe-2S Rieske-type ferredoxin.
 
 
 0.893
fdx2-1
2Fe-2S Rieske-type ferredoxin.
 
 
 0.891
fdhA-4
Formate dehydrogenase, alpha subunit.
    
 0.890
fdhA-3
Formate dehydrogenase, alpha subunit.
    
 0.882
fdx2-3
2Fe-2S Rieske-type ferredoxin.
  
 
 0.873
rps5p
30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
  
 
 0.852
fdhA-1
Formate dehydrogenase, alpha subunit.
    
 0.847
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.