Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX502Conserved hypothetical protein. (100 aa)    
Predicted Functional Partners:
ndh
Putative NADH dehydrogenase.
       0.791
gluS
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
 
     0.715
LRC265
Conserved hypothetical protein.
  
     0.700
serB-1
Putative phosphoserine phosphatase.
  
     0.698
LRC392
Fumarylacetoacetate hydrolase family protein.
       0.692
LRC435
Conserved hypothetical protein; Belongs to the UPF0179 family.
  
     0.687
LRC61
Predicted protease (Mov34 family).
  
     0.680
LRC279
Conserved hypothetical protein.
  
     0.677
RCIX408
Conserved hypothetical protein.
  
     0.673
LRC263
Hypothetical protein.
  
     0.649
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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