STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX502Conserved hypothetical protein. (100 aa)    
Predicted Functional Partners:
ndh
Putative NADH dehydrogenase.
       0.792
LRC265
Conserved hypothetical protein.
  
     0.700
serB-1
Putative phosphoserine phosphatase.
  
     0.698
LRC435
Conserved hypothetical protein; Belongs to the UPF0179 family.
  
     0.687
LRC61
Predicted protease (Mov34 family).
  
     0.680
LRC279
Conserved hypothetical protein.
  
     0.677
RCIX408
Conserved hypothetical protein.
  
     0.673
LRC263
Hypothetical protein.
  
     0.649
RCIX1120
Putative signal sequence peptidase; Similar to orf41 of fosmid clone 1B6mr2.
  
     0.635
rpl44e
50S ribosomal protein L44E; Binds to the 23S rRNA.
  
     0.632
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.