STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX512Putative signal transduction histidine kinase. (534 aa)    
Predicted Functional Partners:
RCIX443
Putative response regulator (CheY-like).
 
 0.977
RCIX1890
Putative response regulator.
 
 
 0.905
cheR
Chemotaxis MCP methyltransferase.
    
 0.882
pdhC
Pyruvate dehydrogenase complex E2,dihydrolipoamide acetyltransferase.
    
 0.826
cheY
Chemotaxis response regulator.
 
 
 
 0.820
RCIX1840
Putative response regulator (CheY-like).
 
 
 
 0.754
LRC113
Predicted signal transduction histidine kinase.
 
   
 0.745
RCIX1277
Predicted signal transduction histidine kinase.
     0.734
RRC490
Putative response regulator (CheY-like).
 
     0.703
RCIX1160
Putative signal transduction histidine kinase.
 
     0.702
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.