STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX576Predicted signal transduction protein. (992 aa)    
Predicted Functional Partners:
RCIX443
Putative response regulator (CheY-like).
  
 
 0.875
pdhC
Pyruvate dehydrogenase complex E2,dihydrolipoamide acetyltransferase.
    
 0.826
pdhB
Pyruvate dehydrogenase complex E1, transketolase beta subunit.
    
 0.702
RRC245
Predicted aldo/keto reductase.
    
 0.700
RCIX2113
Putative signal transduction protein.
 
 
 
0.679
RCIX1890
Putative response regulator.
  
 
 0.672
RRC476
Putative response regulator (CheY-like).
 
 
 
 0.650
RCIX2162
Putative response regulator (CheY-like).
 
 
 
 0.648
hel308
Putative ski2-type helicase; DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks.
   
   0.600
cheY
Chemotaxis response regulator.
   
 
 0.593
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.