STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX587Conserved hypothetical protein. (428 aa)    
Predicted Functional Partners:
RRC517
Conserved hypothetical protein.
  
     0.637
RCIX950
Conserved hypothetical protein.
  
     0.597
rpoF
DNA-directed RNA polymerase, subunit F.
  
     0.583
rpl44e
50S ribosomal protein L44E; Binds to the 23S rRNA.
  
     0.558
RCIX1862
Conserved GTP-binding protein (Ras family).
  
     0.544
atpF
A(1)A(0)-type ATP synthase, subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
     0.533
gsp-8
Putative bacterial type II secretion system protein.
  
     0.533
RCIX1263
Putative type III restriction-modification system, restriction subunit.
  
     0.527
endA
tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp.
 
     0.520
LRC57
Putative single-stranded DNA-specific exonuclease (RecJ-like).
  
     0.512
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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