Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX650Lipase. (325 aa)    
Predicted Functional Partners:
RCIX2368
Putative purine phosphorylase (family 2); Purine nucleoside phosphorylase which is highly specific for 6-oxopurine nucleosides. Cleaves guanosine or inosine to respective bases and sugar-1-phosphate molecules. Involved in purine salvage.
 
  
 0.844
fadD
Putative long chain fatty-acid CoA ligase.
  
 0.787
echF
Ech hydrogenase, subunit F.
  
 
 0.779
RCIX482
Putative hydrogenase 2(4Fe-4S) ferredoxin component (EchF-like).
  
 
 0.779
echD
Ech hydrogenase, subunit D.
    
   0.735
pfdA
Putative chaperonin cofactor prefoldin, alpha subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.
    
 
 0.722
rnh
Ribonuclease H (RNase H); Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
  
   0.600
RCIX450
Putative pheromone shutdown protein (TraB family).
    
 
 0.588
RCIX360
Thioredoxin-like protein.
 
 
 
 0.573
LRC131
Thioredoxin-like protein.
   
 
 0.505
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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