Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RCIX652HesB family protein. (105 aa)    
Predicted Functional Partners:
RCIX1564
Putative Fe-S cluster assembly protein (NifU-like).
  
 
 0.941
nac
Putative transcription factor (alpha-NAC related); Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.
       0.784
RCIX1574
Putative Fe-S cluster assembly protein (SufC-like).
  
 
 0.753
iscS
Class V aminotransferase (NifS-like); Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.
  
 
 0.748
RCIX1570
Class V aminotransferase (NifS-like).
  
 
 0.748
RCIX1573
Putative Fe-S cluster assembly protein (SufB/D-like).
  
 
 0.699
RCIX302
Conserved hypothetical protein.
       0.683
LRC590
Hypothetical protein.
 
 
 
 0.636
RCIX898
Hypothetical protein.
 
 
 
 0.631
dnaK
Chaperonin Hsp70; Acts as a chaperone.
  
 
 0.615
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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