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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX676Conserved hypothetical protein. (322 aa)    
Predicted Functional Partners:
hisA-1
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; Belongs to the HisA/HisF family.
       0.792
RCIX678
Putative cytochrome c biogenesis protein.
 
     0.617
cysH-2
Putative 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase).
  
    0.472
nfo
Putative endonuclease IV.
 
   
 0.464
aif2
Translation initiation factor 2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2.
  
  
 0.442
cysH-1
Putative 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase).
  
    0.436
RCIX285
Conserved hypothetical protein; Belongs to the UPF0292 family.
 
   
 0.436
RCIX1057
Conserved hypothetical protein; Belongs to the UPF0147 family.
  
     0.417
RCIX2021
Putative phosphoesterase.
 
  
 0.410
RCIX2118
Conserved hypothetical protein.
 
     0.403
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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