STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX684Putative transcription regulator (ArsR family). (218 aa)    
Predicted Functional Partners:
hsp20-2
Chaperonin Hsp20; Belongs to the small heat shock protein (HSP20) family.
     
 0.718
RCIX2104
Conserved hypothetical protein.
  
     0.684
cdc48-1
Putative cell division cycle protein 48.
     
 0.672
tgt-1
Archaeosine tRNA-ribosyltransferase.
  
     0.671
RCIX2249
ATPase (AAA superfamily); Belongs to the AAA ATPase family.
 
   
 0.646
RCIX407
Conserved hypothetical protein.
  
     0.616
cdc6-2
Cell division cycle protein 6; Involved in regulation of DNA replication.
  
     0.609
RCIX574
Conserved hypothetical protein.
  
     0.606
mutSa
Putative DNA mismatch repair protein, C-terminal fragment.
  
     0.588
aroQ
Chorismate mutase.
  
   
 0.564
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.