Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX690Conserved hypothetical protein. (83 aa)    
Predicted Functional Partners:
gsp-4
Putative bacterial type II secretion system protein.
  
    0.766
gsp-9
Putative bacterial type II secretion system protein.
  
    0.763
LRC236
Conserved hypothetical protein.
  
  
 0.740
RCIX1209
Hypothetical protein.
  
     0.725
RCIX1387
Conserved hypothetical protein.
  
     0.714
RCIX689
Conserved hypothetical protein.
 
     0.714
RCIX2680
Conserved hypothetical protein.
  
     0.713
RCIX1858
Conserved hypothetical protein.
  
     0.707
aif2
Translation initiation factor 2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2.
 
   
 0.698
RCIX1274
Putative transcription regulator (ArsR family).
  
     0.698
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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