Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX756Hypothetical protein. (511 aa)    
Predicted Functional Partners:
RCIX870
Putative metallo-phosphoesterase.
       0.622
ppiB
Peptidyl-prolyl cis-trans isomerase B (cyclophilin type).
       0.556
RCIX752
Signal sequence peptidase.
     
 0.456
RCIX510
Hypothetical protein.
 
     0.439
RCIX1999
Hypothetical protein.
  
     0.432
RCIX753
Conserved hypothetical protein.
       0.432
RCIX603
Conserved hypothetical protein.
 
     0.431
RCIX412
Hypothetical protein; Similar to RCIX409 and RCIX414.
  
     0.407
nadC
Nicotinate-nucleotide pyrophosphorylase; Involved in the catabolism of quinolinic acid (QA). Belongs to the NadC/ModD family.
 
   
 0.401
RCIX414
Hypothetical protein; Similar to RCIX409 and RCIX412.
  
     0.401
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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