STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gloAPutative lactoylglutathione lyase. (127 aa)    
Predicted Functional Partners:
RCIX772
Conserved hypothetical protein.
       0.752
cheC
Chemotaxis MCP methylation-inhibitor.
    
   0.677
RCIX2603
Predicted chemotaxis protein (CheW/CheC-like).
    
   0.677
echF
Ech hydrogenase, subunit F.
  
  
 0.649
RCIX482
Putative hydrogenase 2(4Fe-4S) ferredoxin component (EchF-like).
  
  
 0.649
fae-hps
Formaldehyde activating hexulose-6-phosphate synthase; Catalyzes the condensation of formaldehyde with tetrahydromethanopterin (H(4)MPT) to 5,10- methylenetetrahydromethanopterin; In the C-terminal section; belongs to the HPS/KGPDC family. HPS subfamily.
       0.515
RRC511
Conserved hypothetical protein.
 
     0.441
msrA
Peptide methionine sulfoxide reductase, domain A; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.435
LRC430
Predicted nitroreductase family protein.
  
  
 0.430
RCIX1600
Hypothetical protein.
  
  
 0.430
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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