Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX784Hypothetical protein. (475 aa)    
Predicted Functional Partners:
RCIX783
Predicted ABC-type transport system, permease component.
 
    0.946
RCIX782
ABC-type transport system, ATPase component.
 
  
 0.867
RCIX1725
Conserved hypothetical protein.
 
    0.777
RCIX788
Putative ABC-type transport system, permease component.
 
    0.774
RCIX1581
Conserved hypothetical protein.
 
    0.749
RCIX1410
Hypothetical protein.
  
     0.740
RCIX801
Hypothetical protein.
  
     0.737
RCIX805
Conserved hypothetical protein.
 
    0.734
LRC125
Conserved hypothetical protein.
 
    0.715
RCIX494
Conserved hypothetical protein.
 
    0.705
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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