Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX802ABC-type transport system, ATPase component. (311 aa)    
Predicted Functional Partners:
RCIX801
Hypothetical protein.
 
  
 0.865
LRC321
ABC-type multidrug transport system, permease component (ABC-2 family).
  
 0.596
RCIX2180
ABC-type transport system, ATPase component.
  
 0.596
RCIX788
Putative ABC-type transport system, permease component.
 
 
 0.584
RCIX783
Predicted ABC-type transport system, permease component.
 
 
 0.580
RCIX1725
Conserved hypothetical protein.
 
 
 0.557
RCIX1581
Conserved hypothetical protein.
 
 
 0.547
RCIX805
Conserved hypothetical protein.
 
 
 0.531
RCIX937
Hypothetical protein.
 
 
 0.504
RCIX817
Hypothetical protein.
 
 
 0.490
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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