Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX820Conserved hypothetical protein. (267 aa)    
Predicted Functional Partners:
RCIA45
Conserved hypothetical protein; Similar to RCIA41.
       0.737
RRC285
Hypothetical protein.
  
     0.642
LRC454
Conserved hypothetical protein.
  
     0.577
RCIX815
Hypothetical protein.
 
     0.543
RCIX2200
Conserved hypothetical protein.
  
     0.497
RCIX1274
Putative transcription regulator (ArsR family).
  
   
 0.494
RRC446
Conserved hypothetical protein.
  
     0.494
RCIX1981
Hypothetical protein.
  
     0.492
RCIX817
Hypothetical protein.
 
     0.492
gsp-1
Putative bacterial type II secretion system protein.
  
     0.480
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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