Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RCIX829ABC-type transport system, periplasmic component. (324 aa)    
Predicted Functional Partners:
RRC303
ABC-type transport system, ATPase component.
 
 
 0.977
RRC301
Putative ABC-type transport system, permease component.
 
 
 0.953
RCIX2658
ABC-type transport system, ATPase component.
 
 
 0.937
RCIX2659
ABC-type transport system, permease component.
 
 
 0.890
RCIX826
Hypothetical protein similar to adenosylcobinamide amidohydrolase (CbiZ, EC 3.5.1.90).
 
  
 0.803
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
  
 0.664
acdAB
acetyl-CoA synthetase (ADP-forming), alpha and beta subunit fusion.
       0.455
RCIX1020
Conserved hypothetical protein.
       0.442
LRC238
Conserved hypothetical protein; Belongs to the UPF0284 family.
     
 0.428
RCIX2746
Phosphate uptake regulator (PhoU family).
     
 0.424
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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