Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
uspA-4Putative universal stress protein A. (151 aa)    
Predicted Functional Partners:
RCIX842
Hypothetical protein.
       0.642
uspA-1
Universal stress protein A.
  
     0.571
uspA-2
Universal stress protein A.
  
     0.566
RCIX845
Putative acetyltransferase (GNAT family).
  
  
 0.538
uspA-5
Universal stress protein A.
  
     0.535
RCIX844
Predicted CAAX amino terminal protease family protein.
       0.504
LRC251
Conserved hypothetical protein.
 
    0.496
RCIX840
Conserved hypothetical protein; Belongs to the UPF0215 family.
       0.477
RCIX1867
Conserved hypothetical CBS domain protein.
 
    0.472
RCIX1868
Conserved hypothetical CBS domain protein.
 
    0.401
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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