Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RCIX848Conserved hypothetical protein. (104 aa)    
Predicted Functional Partners:
rbr-1
Rubrerythrin.
  
  
 0.824
pyrK
Predicted dihydroorotate dehydrogenase, electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
   
 
 0.698
RRC284
Predicted oxidoreductase (cytochrome-c3 hydrogenase, gamma subunit family).
   
 
 0.698
RCIX2176
Putative aldo/keto reductase.
 
 
   0.642
RCIX319
Putative aldo/keto reductase (2[4Fe-4S] ferredoxin-domain protein).
 
 
   0.642
RCIX849
Conserved hypothetical protein.
       0.603
mvhD-1
Coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing hydrogenase), delta subunit.
   
   0.573
mvhD-2
Coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing hydrogenase), delta subunit.
   
   0.573
rbr-2
Rubrerythrin.
 
  
 0.554
dfx
Desulfoferrodoxin (2-Fe-SOR).
 
  
 0.519
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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