Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX850Putative signal transduction histidine kinase. (635 aa)    
Predicted Functional Partners:
RCIX1890
Putative response regulator.
 
   
 0.692
RCIX512
Putative signal transduction histidine kinase.
  
   
 0.667
RCIX443
Putative response regulator (CheY-like).
 
   
 0.638
RRC490
Putative response regulator (CheY-like).
  
     0.561
RCIX1840
Putative response regulator (CheY-like).
 
   
 0.534
RCIX851
Hypothetical protein; Similar to orf5 of fosmid clone 4B7mr3.
       0.508
RCIX130
Conserved hypothetical protein.
  
     0.419
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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