STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uppS-1Undecaprenyl pyrophosphate synthetase. (216 aa)    
Predicted Functional Partners:
RCIX1132
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
 
 0.963
crtE
Putative farnesyltranstransferase; Belongs to the FPP/GGPP synthase family.
 
 
 0.963
RCIX1254
Putative polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
 
 0.954
RCIX888
Conserved hypothetical protein.
     
 0.722
nusA
Transcription termination factor NusA; Participates in transcription termination. Belongs to the NusA family.
  
    0.660
pyrH
Putative uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
 
  
 0.652
RCIX890
Conserved hypothetical protein; Conserved in archaea.
     
 0.600
RCIX1177
Putative RNA methyltransferase.
  
    0.571
miaB
Putative 2-methylthioadenine synthetase.
 
  
 0.544
dfp
DNA/pantothenate metabolism flavoprotein.
 
  
 0.531
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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