Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gphPhosphoglycolate phosphatase; Catalyzes the dephosphorylation of 2-phosphoglycolate. (232 aa)    
Predicted Functional Partners:
RCIX2610
Putative hydrolase (HAD superfamily).
  
 
 0.913
glcD-1
(S)-2-hydroxy-acid dehydrogenase.
    
 0.904
glcD-2
Putative (S)-2-hydroxy-acid dehydrogenase.
    
 0.904
rbcL
Ribulose 1,5-bisphosphate carboxylase (RuBisCO),large subunit.
    
 0.902
pyk
Pyruvate kinase (pyruvate phosphotransferase); Identical to orf1 of fosmid clone 3D10mr4; Belongs to the pyruvate kinase family.
 
 
 0.555
RCIX363
Putative sugar-phosphate adenylyltransferase.
  
  
 0.518
rpl4p
50S ribosomal protein L4P; Forms part of the polypeptide exit tunnel.
  
 
 0.475
LRC61
Predicted protease (Mov34 family).
   
 
 0.450
RRC67
Predicted protease (Mov34 family).
   
 
 0.450
tpi
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
 
  
 0.424
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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