THAPS_7123 protein (Thalassiosira pseudonana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

THAPS_7123

Predicted protein. (391 aa)

Predicted Functional Partners:

B8C9Q0_THAPS

0.876

pcna

0.704

pabA

0.663

B8BUV2_THAPS

0.614

B8C7J6_THAPS

0.614

B8BQF8_THAPS

0.604

B8C9G1_THAPS

0.595

RL7

0.594

B8C1L9_THAPS

0.577

B8C2N4_THAPS

0.576

Your Current Organism:

Thalassiosira pseudonana

NCBI taxonomy Id: 35128
Other names: T. pseudonana

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B8BQF8_THAPS	B8BUV2_THAPS	B8BQF8	B8BUV2	Brix domain-containing protein.	Uncharacterized protein.	0.401
B8BQF8_THAPS	B8C1L9_THAPS	B8BQF8	B8C1L9	Brix domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.660
B8BQF8_THAPS	B8C2N4_THAPS	B8BQF8	B8C2N4	Brix domain-containing protein.	Fcf2 domain-containing protein.	0.569
B8BQF8_THAPS	B8C7J6_THAPS	B8BQF8	B8C7J6	Brix domain-containing protein.	Uncharacterized protein.	0.401
B8BQF8_THAPS	B8C9G1_THAPS	B8BQF8	B8C9G1	Brix domain-containing protein.	Ribosomal_L30 domain-containing protein.	0.753
B8BQF8_THAPS	RL7	B8BQF8	B8BV47	Brix domain-containing protein.	RL7, ribosomal protein 7.	0.753
B8BQF8_THAPS	THAPS_7123	B8BQF8	B5YNE8	Brix domain-containing protein.	Predicted protein.	0.604
B8BUV2_THAPS	B8BQF8_THAPS	B8BUV2	B8BQF8	Uncharacterized protein.	Brix domain-containing protein.	0.401
B8BUV2_THAPS	B8C1L9_THAPS	B8BUV2	B8C1L9	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.565
B8BUV2_THAPS	B8C9G1_THAPS	B8BUV2	B8C9G1	Uncharacterized protein.	Ribosomal_L30 domain-containing protein.	0.735
B8BUV2_THAPS	RL7	B8BUV2	B8BV47	Uncharacterized protein.	RL7, ribosomal protein 7.	0.735
B8BUV2_THAPS	THAPS_7123	B8BUV2	B5YNE8	Uncharacterized protein.	Predicted protein.	0.614
B8C1L9_THAPS	B8BQF8_THAPS	B8C1L9	B8BQF8	Uncharacterized protein; Belongs to the DEAD box helicase family.	Brix domain-containing protein.	0.660
B8C1L9_THAPS	B8BUV2_THAPS	B8C1L9	B8BUV2	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.565
B8C1L9_THAPS	B8C2N4_THAPS	B8C1L9	B8C2N4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Fcf2 domain-containing protein.	0.475
B8C1L9_THAPS	B8C7J6_THAPS	B8C1L9	B8C7J6	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.565
B8C1L9_THAPS	B8C9G1_THAPS	B8C1L9	B8C9G1	Uncharacterized protein; Belongs to the DEAD box helicase family.	Ribosomal_L30 domain-containing protein.	0.730
B8C1L9_THAPS	RL7	B8C1L9	B8BV47	Uncharacterized protein; Belongs to the DEAD box helicase family.	RL7, ribosomal protein 7.	0.728
B8C1L9_THAPS	THAPS_7123	B8C1L9	B5YNE8	Uncharacterized protein; Belongs to the DEAD box helicase family.	Predicted protein.	0.577
B8C1L9_THAPS	pabA	B8C1L9	B8CFU7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.728