STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B8BQJ7_THAPSCCHC-type domain-containing protein. (104 aa)    
Predicted Functional Partners:
B8BS09_THAPS
U5 small nuclear ribonucleoprotein, U5 snRNP.
   
 0.870
B8BTN4_THAPS
Uncharacterized protein.
    
 0.828
B8C4M3_THAPS
Uncharacterized protein.
   
 0.782
B8C695_THAPS
RNA splicing factor.
   
 0.778
pabA
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 0.778
B8BVK5_THAPS
Atp-dependent RNA DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.
   
 0.735
B8BW12_THAPS
Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.
    
 0.711
B8C3D4_THAPS
Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.
   
 0.711
B8C4R4_THAPS
BRCT domain-containing protein.
   
  0.689
B8C1R6_THAPS
Uncharacterized protein.
   
 
 0.680
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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