STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B8BR20_THAPSRhodanese domain-containing protein. (111 aa)    
Predicted Functional Partners:
B8C6B3_THAPS
Uncharacterized protein.
   
   0.747
rpl24
50S ribosomal protein L24, chloroplastic; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
   0.741
RM47
RM47, ribosomal protein 47 mitochondrial large ribosomal subunit.
    
   0.727
B8LDZ0_THAPS
Predicted protein.
   
   0.727
rps17
30S ribosomal protein S17, chloroplastic; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.722
RT17
RT17, ribosomal protein 17 mitochondrial small ribosomal subunit.
   
   0.722
B8CBH8_THAPS
Uncharacterized protein.
  
   0.696
THAPS_23626
Predicted protein.
   
   0.695
THAPS_263061
Iron superoxide dismutase.
  
 
 0.680
THAPS_263062
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.680
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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