STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B8BRA4_THAPSRRM domain-containing protein. (1083 aa)    
Predicted Functional Partners:
B8BS34_THAPS
Uncharacterized protein.
   
 0.692
THAPS_35274
Predicted protein.
    
 0.683
B8CB79_THAPS
MPN domain-containing protein.
   
 0.649
B8CF74_THAPS
Predicted protein.
    
 0.647
B8C3I2_THAPS
Nuclear cap-binding protein subunit 2.
   
 0.635
B8C4S7_THAPS
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.627
B8C5K6_THAPS
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.620
B8BYH0_THAPS
SF3b1 domain-containing protein.
   
 0.612
B8C4J9_THAPS
Sm domain-containing protein.
   
 0.602
B8BUD2_THAPS
WW domain-containing protein.
    
 0.582
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.