STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B8BRL6_THAPSOrnithine cyclodeaminase. (346 aa)    
Predicted Functional Partners:
B8BVL5_THAPS
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
  
 
 0.940
B8BZE7_THAPS
Ornithine aminotransferase.
  
 
 0.940
THAPS_35561
Arginase; Belongs to the arginase family.
  
 
 0.937
ODC1
Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.935
B8C4H2_THAPS
Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.
  
 
 0.922
THAPS_10787
Predicted protein.
     
  0.900
THAPS_38110
Predicted protein.
   
 
  0.900
B8BZN6_THAPS
Fe2OG dioxygenase domain-containing protein.
     
  0.900
B8C3B4_THAPS
Fe2OG dioxygenase domain-containing protein.
     
  0.900
B8C3T1_THAPS
Prolyl 4-hydroxylase alpha subunit-like protein.
     
  0.900
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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