STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B8BTG4_THAPSTFIIB-type domain-containing protein. (50 aa)    
Predicted Functional Partners:
TF2D2
Transcription factor IID, TATA box binding protein.
   
 0.964
MYB27
MYB DNA binding protein/ transcription factor-like protein.
   
 0.964
RPC6
RPC6, dna-directed RNA polymerases III 39 kDa polypeptide.
    
 0.951
RPC2
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.932
RPC1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.932
B8CCH8_THAPS
Dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like protein.
    
 0.908
B8C591_THAPS
TFIIE_alpha domain-containing protein.
    
 0.900
B8BWK0_THAPS
Uncharacterized protein.
    
 0.884
RPC25
RPC25,-like protein to dna-directed RNA polymerase III 25 kDa polypeptide.
    
 0.877
B8C3F5_THAPS
Dna-directed RNA polymerase i.
    
 0.852
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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