STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B8BUP1_THAPSRWD domain-containing protein. (1053 aa)    
Predicted Functional Partners:
B8BYR1_THAPS
Arginyl-trna synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.587
B8CBA7_THAPS
DALR_1 domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.587
rps7
30S ribosomal protein S7, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit.
  
 
 0.537
RS5
RS5, ribosomal protein 5; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.537
B8BYM8_THAPS
Phenylalanyl-trna synthetase.
  
  
 0.517
B8C0D4_THAPS
KH type-2 domain-containing protein.
   
 
 0.497
B8C4U4_THAPS
RF_PROK_I domain-containing protein.
  
  
 0.479
B8BY57_THAPS
RF_PROK_I domain-containing protein.
  
  
 0.477
B8C291_THAPS
Peptide chain release factor 1.
  
  
 0.477
B8CC20_THAPS
Hflx-type G domain-containing protein.
  
  
 0.466
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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