STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B8BV40_THAPSAA_TRNA_LIGASE_II domain-containing protein. (398 aa)    
Predicted Functional Partners:
B8C103_THAPS
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.775
ACP3
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.773
B8CA55_THAPS
tRNA-binding domain-containing protein.
  
  
 0.728
TPS1
Probable tryptophanyl tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.687
B8BXV3_THAPS
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.683
B8BW29_THAPS
Glycyl tRNA synthetase.
   
  
 0.657
B8BS17_THAPS
Glycyl tRNA synthetase.
   
  
 0.646
B8CEW1_THAPS
Valine--tRNA ligase-like protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.644
VTS1
Valyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.643
B8BT87_THAPS
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.638
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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