STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B8BVJ6_THAPSUncharacterized protein. (267 aa)    
Predicted Functional Partners:
B8C4J9_THAPS
Sm domain-containing protein.
   
  0.909
B8C5K6_THAPS
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
  0.909
B8CCM0_THAPS
Small nuclear ribonucleoprotein Sm D2.
    
 0.890
B8BW36_THAPS
Sm domain-containing protein.
    
 0.719
B8BS25_THAPS
Uncharacterized protein.
   
 0.644
B8C5R0_THAPS
KH domain-containing protein.
    
 0.540
THAPS_19743
Small nuclear ribonucleoprotein Sm D3.
    
 0.505
B8CAZ8_THAPS
Small nuclear ribonucleoprotein Sm D3.
    
 0.505
B8BVR7_THAPS
MI domain-containing protein.
   
   0.490
B8BUD2_THAPS
WW domain-containing protein.
   
 
 0.487
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.