STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B8BYL0_THAPSCalpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (972 aa)    
Predicted Functional Partners:
B8LE52_THAPS
Copia-like retroelement pol polyprotein found-like protein.
    
 
 0.668
B8C530_THAPS
Uncharacterized protein.
    
 
 0.653
B8C1M2_THAPS
TLC domain-containing protein.
    
 
 0.644
TUB1
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
   
 0.625
B8BSQ1_THAPS
Uncharacterized protein.
   
 
 0.594
B8CD84_THAPS
NMO domain-containing protein.
   
 0.591
B8BW59_THAPS
Uncharacterized protein.
   
 0.586
B8C003_THAPS
Soluble adenylyl cyclase.
   
 0.586
B8C0A8_THAPS
BTB domain-containing protein.
   
 0.586
B8C0E5_THAPS
Uncharacterized protein.
   
 0.586
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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