STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gapC3Glyceraldehyde-3-phosphate dehydrogenase. (336 aa)    
Predicted Functional Partners:
TPI2
Triosephosphate isomerase.
 
 0.986
ALDO4
Fructose-1,6-bisphosphatase aldolase.
  
 0.979
TKT1
Transketolase.
  
 0.972
TKT2
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
 0.959
ALDO2
Fructose-bisphosphate aldolase.
  
 0.944
B8C631_THAPS
Uncharacterized protein.
  
 0.944
B8C3E7_THAPS
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the rate-limiting step of the oxidative pentose- phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis.
  
 0.892
THAPS_270304
Phosphoglycerate kinase.
 
 0.890
TPI1
Triosephosphate isomerase.
 
 0.890
PGK4
Phosphoglycerate kinase.
 
 0.889
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.