STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B8C2N1_THAPSRNA helicase; Belongs to the DEAD box helicase family. (471 aa)    
Predicted Functional Partners:
B8CCQ0_THAPS
Sas10 domain-containing protein.
   
 0.998
B8CGG5_THAPS
Uncharacterized protein.
   
 0.994
B8C2J2_THAPS
Uncharacterized protein.
   
 
 0.993
B8C934_THAPS
Uncharacterized protein.
   
 
 0.956
B8CFL4_THAPS
WD_REPEATS_REGION domain-containing protein.
   
 0.955
B8CAA0_THAPS
Uncharacterized protein.
   
 0.949
B8BVA9_THAPS
Uncharacterized protein.
   
 0.948
B8C0M8_THAPS
Helicase C-terminal domain-containing protein.
   
 0.947
B8C0X8_THAPS
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.941
B8C1F2_THAPS
Atp-depedent helicase; Belongs to the DEAD box helicase family.
  
 
0.933
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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