STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B8C316_THAPSAA_TRNA_LIGASE_II domain-containing protein. (791 aa)    
Predicted Functional Partners:
B8BYS4_THAPS
Threonyl-trna synthetase.
  
  
 
0.906
B8CDX6_THAPS
GPI mannosyltransferase 1; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis. Transfers the first alpha-1,4-mannose to GlcN- acyl-PI during GPI precursor assembly.
     
 0.895
B8C3Q8_THAPS
RF_PROK_I domain-containing protein.
  
 
 0.888
B8CA55_THAPS
tRNA-binding domain-containing protein.
  
 
 0.887
THAPS_29049
Bacterial protein translation initiation factor 2.
  
 0.874
B8C973_THAPS
DNA end binding protein.
  
 0.874
rps12
30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity).
   
 
 0.870
B8BRC8_THAPS
Ribosomal_L18e/L15P domain-containing protein.
   
 
 0.868
B8C7E6_THAPS
Ribosomal_L18e/L15P domain-containing protein.
   
 
 0.868
B8BQS3_THAPS
30S ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.
  
 
 0.855
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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