STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B8CAT3_THAPSChromodomain-helicase. (698 aa)    
Predicted Functional Partners:
B8LC33_THAPS
Predicted protein.
 
 
0.852
THAPS_35248
Predicted protein.
 
 
0.784
H4_2
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.782
B8C213_THAPS
Uncharacterized protein.
   
 
 0.749
B8C1H9_THAPS
Serine/threonine-protein kinase PLK.
    
 0.746
B8BVK5_THAPS
Atp-dependent RNA DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.
  
 0.741
RP3A
RP3A,-like protein to dna-directed RNA polymerase II third largest subunit.
   
 0.735
B8C076_THAPS
Uncharacterized protein.
   
 
 0.699
THAPS_23469
Predicted protein.
   
 
 0.658
B8BTE9_THAPS
Transcription initiation protein spt4-like protein.
   
 
 0.640
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.