B8CB28_THAPS protein (Thalassiosira pseudonana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B8CB28_THAPS

Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (261 aa)

Predicted Functional Partners:

B8CF48_THAPS

0.988

B8BRP0_THAPS

0.682

B8C7D0_THAPS

0.680

B8CBH5_THAPS

0.678

B8CBQ0_THAPS

0.678

B8C115_THAPS

0.509

B8BQM3_THAPS

0.457

B8C968_THAPS

0.439

B8LBM5_THAPS

0.403

Your Current Organism:

Thalassiosira pseudonana

NCBI taxonomy Id: 35128
Other names: T. pseudonana

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B8BQM3_THAPS	B8CB28_THAPS	B8BQM3	B8CB28	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.457
B8BRP0_THAPS	B8C968_THAPS	B8BRP0	B8C968	Uncharacterized protein.	Uncharacterized protein.	0.550
B8BRP0_THAPS	B8CB28_THAPS	B8BRP0	B8CB28	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.682
B8BRP0_THAPS	B8CF48_THAPS	B8BRP0	B8CF48	Uncharacterized protein.	Uncharacterized protein.	0.596
B8C115_THAPS	B8CB28_THAPS	B8C115	B8CB28	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.509
B8C7D0_THAPS	B8C968_THAPS	B8C7D0	B8C968	Uncharacterized protein.	Uncharacterized protein.	0.549
B8C7D0_THAPS	B8CB28_THAPS	B8C7D0	B8CB28	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.680
B8C7D0_THAPS	B8CF48_THAPS	B8C7D0	B8CF48	Uncharacterized protein.	Uncharacterized protein.	0.592
B8C968_THAPS	B8BRP0_THAPS	B8C968	B8BRP0	Uncharacterized protein.	Uncharacterized protein.	0.550
B8C968_THAPS	B8C7D0_THAPS	B8C968	B8C7D0	Uncharacterized protein.	Uncharacterized protein.	0.549
B8C968_THAPS	B8CB28_THAPS	B8C968	B8CB28	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.439
B8C968_THAPS	B8CBH5_THAPS	B8C968	B8CBH5	Uncharacterized protein.	Ubiquitin protein ligase.	0.550
B8C968_THAPS	B8CBQ0_THAPS	B8C968	B8CBQ0	Uncharacterized protein.	Ubiquitin protein ligase.	0.549
B8C968_THAPS	B8CF48_THAPS	B8C968	B8CF48	Uncharacterized protein.	Uncharacterized protein.	0.507
B8CB28_THAPS	B8BQM3_THAPS	B8CB28	B8BQM3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.457
B8CB28_THAPS	B8BRP0_THAPS	B8CB28	B8BRP0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.682
B8CB28_THAPS	B8C115_THAPS	B8CB28	B8C115	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.509
B8CB28_THAPS	B8C7D0_THAPS	B8CB28	B8C7D0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.680
B8CB28_THAPS	B8C968_THAPS	B8CB28	B8C968	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.439
B8CB28_THAPS	B8CBH5_THAPS	B8CB28	B8CBH5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Ubiquitin protein ligase.	0.678