STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B8CB89_THAPSUncharacterized protein. (511 aa)    
Predicted Functional Partners:
B8BZE8_THAPS
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
    
 0.984
B8CCB5_THAPS
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
    
 0.978
B8CAZ7_THAPS
Uncharacterized protein.
    
 0.955
THAPSDRAFT_508
PUA domain-containing protein.
    
 0.915
B8CCU3_THAPS
TruB_N domain-containing protein.
    
 0.915
B8CDP0_THAPS
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
   
 0.715
THAPS_269961
Predicted protein.
    
 0.712
L7Ae
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
    
 0.712
B8BYI1_THAPS
Helicase ATP-binding domain-containing protein.
   
 
 0.600
B8C513_THAPS
Uncharacterized protein.
   
 
 0.600
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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