STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobAUroporphyrin-iii C-methyltransferase. (241 aa)    
Predicted Functional Partners:
PbgD
Porphobilinogen deaminase.
 
 
 0.913
B8C2D0_THAPS
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
 
  
 0.818
NIR_2
Nitrite reductase-ferredoxin dependent.
 
  
 0.756
B8BQL7_THAPS
Uncharacterized protein.
  
  
 0.740
B8BZI8_THAPS
Uncharacterized protein.
 
  
 0.718
B8CCL3_THAPS
Phosphoadenosine-phosphosulphate reductase.
  
  
 0.714
B8C0R5_THAPS
Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family.
 
  
 0.706
THAPS_35690
Predicted protein.
 
  
 0.703
ASK1
Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.
  
  
 0.693
B8CBW8_THAPS
ATP sulfurylase.
  
  
 0.678
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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