B8CD70_THAPS protein (Thalassiosira pseudonana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B8CD70_THAPS

HMG box domain-containing protein. (373 aa)

Predicted Functional Partners:

B8C076_THAPS

0.948

B8C213_THAPS

0.813

SUPT6H

0.781

B8BVF7_THAPS

0.779

B8BV42_THAPS

0.751

B8BTE9_THAPS

0.738

RP3A

0.727

B8CBV1_THAPS

0.727

Rpb8

0.711

B8CC64_THAPS

0.704

Your Current Organism:

Thalassiosira pseudonana

NCBI taxonomy Id: 35128
Other names: T. pseudonana

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B8BTE9_THAPS	B8BV42_THAPS	B8BTE9	B8BV42	Transcription initiation protein spt4-like protein.	CDC73_C domain-containing protein.	0.975
B8BTE9_THAPS	B8BVF7_THAPS	B8BTE9	B8BVF7	Transcription initiation protein spt4-like protein.	Uncharacterized protein.	0.970
B8BTE9_THAPS	B8C076_THAPS	B8BTE9	B8C076	Transcription initiation protein spt4-like protein.	Uncharacterized protein.	0.997
B8BTE9_THAPS	B8C213_THAPS	B8BTE9	B8C213	Transcription initiation protein spt4-like protein.	Uncharacterized protein.	0.997
B8BTE9_THAPS	B8CBV1_THAPS	B8BTE9	B8CBV1	Transcription initiation protein spt4-like protein.	Uncharacterized protein.	0.969
B8BTE9_THAPS	B8CC64_THAPS	B8BTE9	B8CC64	Transcription initiation protein spt4-like protein.	Uncharacterized protein.	0.999
B8BTE9_THAPS	B8CD70_THAPS	B8BTE9	B8CD70	Transcription initiation protein spt4-like protein.	HMG box domain-containing protein.	0.738
B8BTE9_THAPS	RP3A	B8BTE9	B8BWN8	Transcription initiation protein spt4-like protein.	RP3A,-like protein to dna-directed RNA polymerase II third largest subunit.	0.999
B8BTE9_THAPS	Rpb8	B8BTE9	B8CGC8	Transcription initiation protein spt4-like protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.997
B8BTE9_THAPS	SUPT6H	B8BTE9	B8C8T3	Transcription initiation protein spt4-like protein.	SUPT6H,-like protein to suppressor of ty 6.	0.993
B8BV42_THAPS	B8BTE9_THAPS	B8BV42	B8BTE9	CDC73_C domain-containing protein.	Transcription initiation protein spt4-like protein.	0.975
B8BV42_THAPS	B8BVF7_THAPS	B8BV42	B8BVF7	CDC73_C domain-containing protein.	Uncharacterized protein.	0.999
B8BV42_THAPS	B8C076_THAPS	B8BV42	B8C076	CDC73_C domain-containing protein.	Uncharacterized protein.	0.999
B8BV42_THAPS	B8C213_THAPS	B8BV42	B8C213	CDC73_C domain-containing protein.	Uncharacterized protein.	0.999
B8BV42_THAPS	B8CBV1_THAPS	B8BV42	B8CBV1	CDC73_C domain-containing protein.	Uncharacterized protein.	0.999
B8BV42_THAPS	B8CC64_THAPS	B8BV42	B8CC64	CDC73_C domain-containing protein.	Uncharacterized protein.	0.913
B8BV42_THAPS	B8CD70_THAPS	B8BV42	B8CD70	CDC73_C domain-containing protein.	HMG box domain-containing protein.	0.751
B8BV42_THAPS	RP3A	B8BV42	B8BWN8	CDC73_C domain-containing protein.	RP3A,-like protein to dna-directed RNA polymerase II third largest subunit.	0.950
B8BV42_THAPS	Rpb8	B8BV42	B8CGC8	CDC73_C domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.961
B8BV42_THAPS	SUPT6H	B8BV42	B8C8T3	CDC73_C domain-containing protein.	SUPT6H,-like protein to suppressor of ty 6.	0.977