STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B8CDR8_THAPSGTP pyrophosphokinase. (719 aa)    
Predicted Functional Partners:
rpl31
50S ribosomal protein L31, chloroplastic; Binds the 23S rRNA.
  
 
 0.731
TMS1
Possible thymidylate synthase.
  
  
 0.709
rpl36
50S ribosomal protein L36, chloroplastic.
   
 
 0.695
RL5
RL5, ribosomal protein 5, 60S large ribosomal subunit.
    
 
 0.688
RS15B
RS15B, ribosomal protein 15B 40S small ribosomal subunit; Belongs to the universal ribosomal protein uS19 family.
    
   0.686
B8C0D4_THAPS
KH type-2 domain-containing protein.
    
   0.686
RL23a
RL23a, ribosomal protein 23a 60S large ribosomal subunit.
    
   0.686
RL35
RL35, ribosomal protein 35 60S large ribosomal subunit.
    
   0.686
rps9
30S ribosomal protein S9, chloroplastic.
   
 
 0.644
B8BQR2_THAPS
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.644
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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