STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B8CFL5_THAPSWD40-repeat protein. (327 aa)    
Predicted Functional Partners:
B8BQI8_THAPS
Small nuclear ribonucleoprotein prp4.
  
    0.523
B8C2F7_THAPS
WD_REPEATS_REGION domain-containing protein.
  
    0.511
B8C175_THAPS
WD40-repeat protein.
  
    0.504
B8C9K3_THAPS
WD40-repeat protein.
  
     0.503
B8C3H6_THAPS
WD40-repeat protein.
  
     0.493
THAPS_41333
WD-40 repeat containing protein.
  
    0.488
B8BS23_THAPS
WD_REPEATS_REGION domain-containing protein.
  
     0.483
B8CBR5_THAPS
WD_REPEATS_REGION domain-containing protein.
  
     0.482
B8CFB4_THAPS
WD40-repeat protein.
  
    0.479
B8C0X9_THAPS
Pre-mrna splicing factor splicing factor hprp17-like protein.
  
     0.477
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.